IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene VPS41 Ensembl ENSG00000006715 Chromosome 7 Start 38730068 End 38915325
Description Vacuolar protein sorting-associated protein 41 homolog (S53) [Source:UniProtKB/Swiss-Prot;Acc:P49754]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 12713
     Entrez Gene : 27072
     UCSC : uc003tgy.2
     GeneCards : 12713
     RefSeq : NM_014396
     CCDS : CCDS5457.1
     Uniprot : P49754
     Interpro : P49754
     OMIM : 605485
     GeneTests : VPS41
     CGAP : VPS41
     PMID : 9159129

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  41217_at  -0.22  3.20e-1  4.25e-1  -0.56  7.85e-2  1.34e-1
 HG_U133A  203106_s_at  0.22  1.40e-2  2.14e-2  2.92  2.27e-78  8.83e-78
 HG_U133A  210849_s_at  0.37  7.12e-13  3.25e-12  -6.26  4.63e-128  7.08e-127
 HG_U133_Plus2  203106_s_at  0.27  1.26e-2  2.51e-2  0.14  1.48e-1  1.91e-1
 HG_U133_Plus2  210849_s_at  0.35  1.06e-8  6.43e-8  0.09  1.46e-1  1.89e-1
 HG_U133_Plus2  235625_at  0.02  8.08e-1  8.55e-1  -0.34  8.03e-4  1.57e-3
 Stanford  16891  0.08  7.41e-1  8.53e-1  -0.26  3.19e-1  5.60e-1
 Agilent_HS_21.6K  6786  0.04  3.66e-1  5.53e-1  0.01  8.47e-1  9.06e-1
 Agilent_HS_21.6K  16149  0.03  1.76e-1  3.44e-1  0.00  8.74e-1  9.24e-1

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  203106_s_at  -0.04  9.02e-1  9.94e-1  0.19  4.28e-1  1.00e+0
 HG_U133A  210849_s_at  -0.23  1.52e-1  8.11e-1  -0.06  6.39e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 41217_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 203106_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 210849_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 203106_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 210849_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 235625_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 16891    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 6786    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 16149    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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