IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene GALNT12 Ensembl ENSG00000119514 Chromosome 9 Start 100609802 End 100652163
Description Polypeptide N-acetylgalactosaminyltransferase 12 (EC 2.4.1.41)(Polypeptide GalNAc transferase 12)(pp-GaNTase 12)(GalNAc-T12)(Protein-UDP acetylgalactosaminyltransferase 12)(UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 12) [Source:UniProtKB/Swiss-Prot;Acc:Q8IXK2]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 19877
     Entrez Gene : 79695
     UCSC : uc004ayz.2
     GeneCards : 19877
     RefSeq : NM_024642
     CCDS : CCDS6737.1
     Uniprot : Q8IXK2
     Interpro : Q8IXK2
     OMIM : 610290
     GeneTests : GALNT12
     CGAP : GALNT12
     PMID : 12135769

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  218885_s_at  0.14  2.28e-1  2.75e-1  -0.96  4.08e-24  6.30e-24
 HG_U133_Plus2  218885_s_at  -0.55  1.23e-4  3.83e-4  -1.64  8.93e-18  9.64e-17
 HG_U133_Plus2  222773_s_at  -0.32  7.30e-2  1.17e-1  -1.08  4.77e-9  1.87e-8
 Agilent_HS_21.6K  7978  0.08  3.83e-1  5.70e-1  -0.09  1.04e-1  2.14e-1
 Agilent_HS_21.6K  12932  0.07  5.07e-1  6.80e-1  -0.23  3.48e-3  1.52e-2

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  218885_s_at  0.03  9.60e-1  9.98e-1  -0.35  2.96e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U133A - 218885_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 218885_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 222773_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 7978    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 12932    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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