IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene GARNL3 Ensembl ENSG00000136895 Chromosome 9 Start 129045207 End 129195647
Description GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5VVW2]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 25425
     Entrez Gene : 84253
     UCSC : uc011mae.1
     GeneCards : 25425
     RefSeq : NM_032293
     CCDS : CCDS6869.2
     Uniprot : Q5VVW2
     Interpro : Q5VVW2
     GeneTests : GARNL3
     CGAP : GARNL3
     PMID : 11230166

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  216165_at  -0.18  1.05e-1  1.37e-1  2.93  5.10e-56  1.28e-55
 HG_U133_Plus2  1563907_at  -0.37  3.93e-2  6.82e-2  -0.48  2.14e-2  3.29e-2
 HG_U133_Plus2  216165_at  -0.11  6.12e-1  6.89e-1  -0.41  9.94e-2  1.34e-1
 HG_U133_Plus2  223604_at  -0.38  6.42e-4  1.73e-3  0.01  8.81e-1  9.03e-1
 HG_U133_Plus2  238227_at  0.74  1.33e-7  6.91e-7  1.05  8.09e-12  4.42e-11
 Agilent_HS_21.6K  4256  -0.05  4.01e-1  5.87e-1  0.01  8.84e-1  9.31e-1
 Agilent_HS_21.6K  12249  0.03  5.75e-1  7.33e-1  0.03  5.78e-1  7.13e-1

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  216165_at  0.38  2.48e-1  8.51e-1  -0.21  4.35e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U133A - 216165_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 1563907_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 216165_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 223604_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 238227_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 4256    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 12249    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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