IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene SDCCAG3 Ensembl ENSG00000165689 Chromosome 9 Start 138416196 End 138424882
Description Serologically defined colon cancer antigen 3 (Antigen NY-CO-3) [Source:UniProtKB/Swiss-Prot;Acc:Q96C92]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 10667
     Entrez Gene : 10807
     UCSC : uc004chi.2
     GeneCards : 10667
     RefSeq : NM_001039707
     CCDS : CCDS6999.2
     Uniprot : Q96C92
     Interpro : Q96C92
     GeneTests : SDCCAG3
     CGAP : SDCCAG3
     PMID : 9610721

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  218427_at  0.67  2.31e-21  2.00e-20  1.43  1.12e-36  2.07e-36
 HG_U133_Plus2  218427_at  0.73  7.83e-19  1.64e-17  1.13  4.36e-28  1.58e-26
 HG_U133_Plus2  238111_at  0.45  8.31e-3  1.73e-2  0.57  2.68e-3  4.82e-3
 Stanford  9224  1.14  1.57e-4  4.40e-3  1.58  4.86e-3  4.18e-2
 Stanford  14108  1.21  2.60e-3  2.69e-2  0.97  2.86e-2  1.16e-1
 Agilent_HS_21.6K  4227  0.13  1.72e-3  1.18e-2  0.18  1.51e-4  1.13e-3

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  218427_at  0.27  2.07e-1  8.33e-1  0.18  3.12e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U133A - 218427_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 218427_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 238111_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 9224    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 14108    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 4227    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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