IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene COBRA1 Ensembl ENSG00000188986 Chromosome 9 Start 139269580 End 139287819
Description Negative elongation factor B (NELF-B)(Cofactor of BRCA1) [Source:UniProtKB/Swiss-Prot;Acc:Q8WX92]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 24324
     Entrez Gene : 25920
     UCSC : uc004cmm.3
     GeneCards : 24324
     RefSeq : NM_015456
     CCDS : CCDS7040.1
     Uniprot : Q8WX92
     Interpro : Q8WX92
     OMIM : 611180
     GeneTests : COBRA1
     CGAP : COBRA1
     PMID : 11230166

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  35205_at  0.13  1.84e-2  3.94e-2  0.22  2.88e-3  7.78e-3
 HG_U133A  202757_at  0.02  6.48e-1  6.92e-1  -0.38  2.88e-10  3.63e-10
 HG_U133_Plus2  202757_at  0.27  8.12e-4  2.15e-3  0.65  2.76e-10  1.26e-9
 HG_U133_Plus2  238052_at  0.36  7.60e-4  2.02e-3  0.85  9.76e-12  5.28e-11
 Agilent_HS_21.6K  4670  -0.11  8.43e-4  6.67e-3  -0.07  3.63e-2  9.72e-2
 Agilent_HS_21.6K  12898  -0.07  1.51e-2  6.21e-2  -0.05  1.19e-1  2.35e-1

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  202757_at  -0.03  8.45e-1  9.88e-1  0.12  3.37e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 35205_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 202757_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 202757_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 238052_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 4670    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 12898    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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