IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene SMC5 Ensembl ENSG00000198887 Chromosome 9 Start 72063698 End 72159609
Description Structural maintenance of chromosomes protein 5 (hSMC5) [Source:UniProtKB/Swiss-Prot;Acc:Q8IY18]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 20465
     Entrez Gene : 23137
     UCSC : uc004ahr.2
     GeneCards : 20465
     RefSeq : NM_015110
     CCDS : CCDS6632.1
     Uniprot : Q8IY18
     Interpro : Q8IY18
     OMIM : 609386
     GeneTests : SMC5
     CGAP : SMC5
     PMID : 9628581

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  41379_at  -0.25  5.37e-3  1.37e-2  -0.11  3.32e-1  4.37e-1
 HG_U133A  212926_at  -0.15  1.12e-1  1.45e-1  0.93  5.97e-14  7.94e-14
 HG_U133A  212927_at  -0.21  2.43e-2  3.56e-2  3.02  5.85e-89  2.97e-88
 HG_U133_Plus2  212926_at  -0.55  2.41e-8  1.40e-7  -0.49  8.14e-5  1.84e-4
 HG_U133_Plus2  212927_at  -0.65  5.71e-12  5.32e-11  -0.77  2.62e-9  1.06e-8
 HG_U133_Plus2  237725_x_at  -0.39  2.63e-2  4.80e-2  -0.65  7.47e-4  1.47e-3

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  212926_at  -0.13  7.05e-1  9.69e-1  0.39  3.77e-2  1.00e+0
 HG_U133A  212927_at  -0.33  4.05e-1  9.03e-1  0.66  3.22e-2  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 41379_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 212926_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 212927_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 212926_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 212927_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 237725_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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