IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene VPS13A Ensembl ENSG00000197969 Chromosome 9 Start 78982181 End 79222219
Description Vacuolar protein sorting-associated protein 13A (Chorein)(Chorea-acanthocytosis protein) [Source:UniProtKB/Swiss-Prot;Acc:Q96RL7]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 1908
     Entrez Gene : 23230
     UCSC : uc004akr.2
     GeneCards : 1908
     RefSeq : NM_001018037
     CCDS : CCDS6655.1
     Uniprot : Q9H995
     Interpro : Q9H995
     OMIM : 605978
     GeneTests : VPS13A
     CGAP : VPS13A
     PMID : 9382101

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  40000_f_at  -0.02  8.81e-1  9.16e-1  0.05  6.84e-1  7.65e-1
 HG_U95  40001_r_at  0.06  8.41e-1  8.88e-1  0.30  4.07e-1  5.13e-1
 HG_U95  40002_r_at  0.27  5.26e-2  9.63e-2  0.57  5.51e-4  1.83e-3
 HG_U133A  214785_at  -0.07  3.96e-1  4.51e-1  -3.38  8.33e-93  4.65e-92
 HG_U133A  214852_x_at  -0.23  1.09e-1  1.42e-1  0.55  6.04e-4  6.77e-4
 HG_U133_Plus2  1570295_at  -0.02  9.20e-1  9.41e-1  0.16  4.43e-1  5.04e-1
 HG_U133_Plus2  214785_at  0.12  1.46e-1  2.11e-1  0.17  6.92e-2  9.63e-2
 HG_U133_Plus2  214852_x_at  -0.25  1.76e-1  2.48e-1  0.02  9.08e-1  9.26e-1
 HG_U133_Plus2  227987_at  -0.30  1.49e-3  3.73e-3  -0.39  3.28e-4  6.81e-4
 HG_U133_Plus2  227988_s_at  -0.40  3.56e-6  1.47e-5  -0.52  1.42e-7  4.63e-7
 HG_U133_Plus2  231585_at  -0.64  1.32e-4  4.10e-4  -0.66  1.74e-4  3.75e-4
 Agilent_HS_21.6K  15434  0.15  8.12e-2  2.04e-1  0.06  5.00e-1  6.48e-1
 Agilent_HS_21.6K  17931  0.09  5.46e-2  1.55e-1  0.05  1.80e-1  3.18e-1

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  214785_at  -0.27  3.43e-1  8.87e-1  0.49  7.95e-3  1.00e+0
 HG_U133A  214852_x_at  0.35  4.68e-1  9.21e-1  0.15  6.83e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 40000_f_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U95 - 40001_r_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U95 - 40002_r_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 214785_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 214852_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 1570295_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 214785_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 214852_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 227987_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 227988_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 231585_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 15434    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 17931    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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