Quick Examples
ERBB2 - (chr) (gene)
EGFR - (chr) (gene)
hsa-let-7e - (chr) (miRNA)
hsa-mir-17 - (chr) (miRNA)
hsa-mir-31 - (chr) (miRNA)
Quick Search
Search a gene or miRNA:

( ex: TP53 or hsa-mir-200b )


Map of Significant Genes
AD : Gene AD      SCC : Gene SCC
Map of Significant miRNAs
AD : miRNA AD      SCC : miRNA SCC
Advanced search
( ex: Chromosome "20", "14q13.3" or others )
( ex: "Gene Name", "Accession number", "Gene ID", "Marker" or others )

Citation
To cite IGDB.NSCLC:
Kao S, Shiau CK, Gu DL, Ho CM, Su WH, Chen CF, Lin CH, Jou YS. IGDB.NSCLC: Integrated Genomic Database of Non-Small Cell Lung Cancer, Nucleic Acids Res. 2012 Jan 1; 40(D1): D972- D977.

PubMed Link
NAR Link

Tutorial
Gene (miRNA) view:
Gene Information Somatic Mutaions Experimental Evidence Fold Change Result Expression Data Cancer Gene Index miRNA Information
Gene Information:
(1) Hyperlink to Ensembl web site.
(2) Hyperlink to other useful web sites.

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Somatic Mutaions:
(1) Hyperlink to COSMIC web site.
(2) Hyperlink to PubMed web site.
(3) Click to provide more information.

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Experimental Evidence:
(1) Gene expression (red : up-regulation, green : down-regulation).
(2) Sample number (positive sample numbers / total sample numbers (percentage %)).
(3) Detected method.
(4) Hyperlink to PubMed web site.

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Microarray Gene Expression Fold Change Result:
(1) Hyperlink to sample result below.
(2) Probeset experssion result (red : up-regulation / green : down-regulation when p value is smaller than 0.01).

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Microarray Expression Data:
(1) Hyperlink to fold change result above.
(2) Sample percentage that is higher (or lower) than 1SD +(-) Avg, 2SD +(-) Avg, and 3SD +(-) Avg. (Avg : Average of NORMAL samples; SD : Standard Deviation)
(3) Tumor sample log2(intensity) value. (HG_U95, HG_U133A, and HG_U133_Plus2)
(4) Average log2 value of NORMAL samples.
(5) Tumor sample log2(tumor/reference) value. (Stanford and Agilent_HS_21.6K)

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Cancer Gene Index:       ( To learn more )
(1) How many entries show in one page?
(2) Input key word that filtered entries from total entries.
(3) Hyperlink to PubMed web site.
(4) Information of Showing entries.
(5) Click to change page.

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miRNA Information:
(1) Hyperlink to miRNA predicted target web sites.

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